Welcome
Publications
Research
Teaching

email
cedric.chauve [at] sfu.ca
office
(SFU) : SC K10516
Tel: (778) 782-7091
Fax: (778) 782-4947

mail address
Cedric Chauve
Dep. Mathematics, SFU
8888 University Drive
Burnaby, BC, V5A 1S6, Canada

Supervised students and post-docs


Postdocs


Graduate students, PhD

Graduate students, MSc

  • Alice Yue (2015-, MSc, SFU, MADD_Gen, joint supervision with Ryan Brinkman).
    Research topics: flow cytometry algorithms.

  • France Paquet-Nadeau (2015-, MSc, SFU, Mathematics, joint supervision with Marni Mishna)
    Research topics: enumeration of seeds neighbourhoods.

  • Akbar Raffiey (2014-, MSc, SFU, Mathematics, joint supervision with Jan Manuch and Ladislav Stacho)
    Research topics: vertex ordering problems in computational biology.

  • Maria Tamayo (2010-2013, MSc, SFU, Mathematics, joint supervision with Tamon Stephen)
    Research topics: Tucker patterns
    Papers: thesis.

  • Mehrnoush Malekesmaeili (2010-2012, MSc, SFU, Mathematics, senior supervision by Tamon Stephen)
    Research topics: non-C1P matrices
    Papers: thesis, IPL 2012.

  • Ahmad Mahmoody Ghaidary (2009-2011, MSc, SFU, Mathematics, joint supervision with Ladislav Stacho)
    Research topics: DCJ median algorithms
    Papers: thesis, poster (RECOMB-CG 2010, IWOCA 2011), ArXiV 1111.5872.

  • Ashok Rajaraman (2009-2011, MSc, SFU, Mathematics)
    Research topics: ancestral protein-protein interaction networks
    Thesis.

  • Vivija You (2007-2009, MSc, SFU, Mathematics)
    Research topics: The Consecutive-Ones Property
    Papers: thesis, RECOMB-CG 2009, J. Comput. Biol. (RECOMB-CG 2009 issue).

  • Jacob Post (2006-2009, MSc, Computer Science, SFU, joint supervision with Pavol Hell, SFU).
    Research topics: Combinatorics of arc diagrams, Ferrers fillings, Young tableaux and lattice paths.
    Papers: thesis (defense), FPSAC 2010.

  • Karine St-Onge (2004-2006, MSc, Computer Science, UQAM, joint supervision with Anne Bergeron, UQAM).
    Research topics: Conserved gene clusters in bacterial genomes
    Papers: thesis, CompBioNets 2005.

  • Valentin Guignon (2004-2006, MSc, Bioinformatics, Université de Montréal, joint supervision with Sylvie Hamel, UdM)
    Research topics: Comparison of RNA secondary structures
    Papers: thesis, SPIRE 2005, poster ISMB 2008, TCS 2011.


Undergraduate students

  • Jake Turner (Summer 2014, SFU, Mathematics, NSERC USRA, joint supervision with Tamon Stephen)
    Research topics: Tucker patterns.

  • Rosemary McCloskey (Summer 2011, SFU, Mathematics, NSERC USRA, joint supervision with Marni Mishna)
    Research topics: Combinatorics of common interval trees.

  • Bradley Jones (Summer 2011 to Spring 2012, SFU, Mathematics, VPR USRA)
    Research topics: Efficient implementation of ancestral genome reconstruction methods.
    Papers: Bioinformatics 2012.

  • Ryan Coghlan (Fall 2009, SFU, Mathematics, joint supervision with Tamon Stephen)
    Research topics: A program to decide the gapped-C1P property.
    Papers: poster RECOMB-CG 2010.

  • Ryan Coghlan and Saehee Choi (Summer 2009, SFU, Mathematics, NSERC USRA, joint supervision with Tamon Stephen)
    Research topics: On the 1-C1P property for ancestral genome reconstruction

  • Andrew McPherson (Summer 2008, SFU, Mathematics, NSERC USRA)
    Research topics: Ancestral genome reconstruction
    Papers: ISBRA 2009.

  • Huiyi Lu (Summer 2007, SFU, Mathematics, NSERC USRA)
    Research topics: Metagenomics

  • Yannick Gingras (Summer 2005, UQAM, Computer Science, NSERC USRA, joint supervision with Anne Bergeron, UQAM)
    Research topics: Whole genome synteny comparison
    Papers: poster RECOMB-CG 2005.

  • Hadrien-Charles David (Summer 2004, UQAM, Computer Science, LaCIM USRA)
    Research topics: PQ-trees and conserved intervals

  • Patrick Simard (Summer 2003, UQAM, Mathematics, NSERC USRA)
    Research topics: GPI-anchors detection using HMM
    Papers: poster HUPO 2003.

  • Guy Larochelle (Summer 2003, UQAM, Computer Science, NSERC USRA)
    Research topics: RNA secondary structures pattern matching

  • Karine St-Onge (Summer 2002, UQAM, Computer Science, NSERC USRA, joint supervision with Anne Bergeron, UQAM)
    Research topics: evolution scenarios with gene duplication.

  • Alexis Musanganya (Summer 2002, UQAM, Computer Science, LaCIM USRA)
    Research topics: sorting by reversals

  • Jean-Philippe Beauchamps (Summer 2002, UQAM, Mathematics, LaCIM USRA, joint supervision with Pierre Leroux, UQAM)
    Research topics: random generation of planar cacti
    Software: GenCacti

  • Karine St-Onge (Summer 2001, UQAM, Computer Science, NSERC USRA, joint supervision with Anne Bergeron, UQAM)
    Research topics: sorting by reversals
    Papers: JOBIM 2002, poster RECOMB 2002.